PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0039300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 189aa    MW: 20716.1 Da    PI: 10.2789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0039300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11249454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   Ave+Ik+L
  Spipo6G0039300  2 SHIAVERNRRRQMNEHLKVLRSLTPGF---YIKRGDQASIIGGAVEFIKEL 49
                    89************************9...9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-10154No hitNo description
PROSITE profilePS5088815.021149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-11261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-9249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-9455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKV LRSLTPGFYI KRGDQASIIG GAVEFIKELH LVLRSLEAKK  60
KRRRFSPSPS PSPRSLLPVT PPPEAPSAAA SRALELGACS SSPVADVEVK ISGSNVILRT  120
LSKRVPGQAA RVISVLEKLS FEVLHLNIST MEDTVLYSFV IKIGLDCKLS VEDLAHEVQK  180
CFSQEVAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15863KKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557389.13e-94PREDICTED: transcription factor MUTE
SwissprotQ9M8K64e-75MUTE_ARATH; Transcription factor MUTE
TrEMBLK4AXQ01e-90K4AXQ0_SOLLC; Uncharacterized protein
STRINGSolyc01g080050.2.14e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.17e-70bHLH family protein